VISDB Viral Integration Site DataBase

VIS ID

TVIS30015032

Fusion event

HIV-CDADC1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr13

Cytoband

q14.2

Reference genome

Start

End

49825525/49251600 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-939-5p ; hsa-mir-1275 ; hsa-mir-4310 ; hsa-mir-4477a ; hsa-mir-4665-5p ; hsa-mir-1343-5p ; hsa-mir-4723-5p ; hsa-mir-4729 ; hsa-mir-5698 ; hsa-mir-6081 ; hsa-mir-6838-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-7157-5p ; hsa-mir-106a-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-5584-3p ; hsa-mir-655-5p ; hsa-mir-148a-5p ; hsa-mir-4525 ; hsa-mir-5010-5p ; hsa-mir-625-5p ; hsa-mir-6890-5p ; hsa-mir-3675-5p

Nearest miRNA

hsa-mir-2276/Upstream/5055400; hsa-mir-1267/Downstream/744815;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/3033, chr13-CpG: 57/Downstream/192385

Upstream sequence

CTCGTTTTAGTTCTGTTTTTTTATATACACACCACATCCTGTGCTGAAATTAAGTTTTTTTTTTCAACAGGCACAAGTTGTATTTAATTAGTGAGAAATG

Downstream sequence

ACATTTATGTTTCTATTAGGAAGGAATTGATTGGCCAACTAATTGTTGAAGTTTATTTGCAAATAATACACACCCTACTGTTTCCTCATACTATATAGAG

Target sequence

gaaaaaaaaagaaaaaaaaaagaaaaaaaaaCGTATAAAAACTGGACATATTAGAGATTGAATACAAATTTTGAAAAGGCGTTCTTTTTTTTGTAAATATCCAGATGTGATCTCGTTTTAGTTCTGTTTTTTTATATACACACCACATCCTGTGCTGAAATTAAGTTTTTTTTTTCAACAGGCACAAGTTGTATTTAATTAGTGAGAAATG