Basic Information
VIS ID
TVIS30015038
Fusion event
HIV-chr13 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
85917943/85343808 (Hg38)
End
85917877/85343808 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/7645692; hsa-mir-1267/Downstream/2274857;
Nearest TSS
ENST00000623511/Upstream/264888; ENST00000424926/Downstream/19793;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1464046, chr13-CpG: 121/Downstream/2327506
Nearby gene
SLITRK6(No orient, 448978)
Upstream sequence
ataagatcaaagaagtaagagactaggatgttaaatggataatccagtagaaagtactagcaccactaataatgataataattgtgggaatagtggttac
Downstream sequence
aacagttttcaagaaatgagagaagttttgcattgatcataactcaagttattatcacaagatgttatttcaaaggagtcaggataaagtctggaattgt
Target sequence
atggataatccagtagaaagtactagcaccactaataatgataataattgtgggaatagtggttac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate