Basic Information
VIS ID
TVIS30015040
Fusion event
HIV-chr13 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
105793254/105140903 (Hg38)
End
105793216/105140903 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/3094899; hsa-mir-1267/Downstream/2390268;
Nearest TSS
ENST00000623511/Upstream/1715703; ENST00000640578/Downstream/324964;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2294490, chr13-CpG: 29/Downstream/1352157
Nearby gene
DAOA-AS1(No orient, 318151)
Upstream sequence
CCATGAAGTCACTGCACTGCATGGTTACCTAAGTGCAGATTACTCCAACATTTTAAATTTCATATATTGATTTCATTCCAGCAGAACACTTCAGACTATC
Downstream sequence
TGACTCAAATTTTCAAGAGGAGATTTCTTACCAGGGAATTGAAGTACATGCTCAAGCTGCTTACATGCCCATATGTTCTGTTTCCACTTAGGATAAAATA
Target sequence
TATATTGATTTCATTCCAGCAGAACACTTCAGACTATC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate