Basic Information
VIS ID
TVIS30015061
Fusion event
HIV-LOC102724945 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
34660376/34191170 (Hg38)
End
34660433/34191170 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102724945
Nearest miRNA
hsa-mir-208a/Upstream/3176428; hsa-mir-1185-1/Downstream/2761139;
Nearest TSS
ENST00000550708/Upstream/21404; ENST00000554608/Downstream/31707;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/130417, chr14-CpG: 34/Downstream/271243
Nearby gene
EGLN3(No orient, 240092)
Upstream sequence
CATCTTCAGGTATATTCTCCCAGGTGGGCAGCAGGTATCAAACATACCAAAACATGAAGACAAGATATGAACGAGCAAAGAGGAGGAACTGGCTATGGCT
Downstream sequence
AACTATGTAAAATAAAAAGATTATTGAATTTACTAAATGCCCTATATTGTTATAAGAACAAGGCAAATCATAGCTTTCAGCCCCAACCAATTTCCTCATG
Target sequence
AAAACCCAAGACAATGGGTGAGTGGGAAGTTGTTATTTTTTTACATTTAGGTCACTG
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate