VISDB Viral Integration Site DataBase

VIS ID

TVIS30015078

Fusion event

HIV-SYNE2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q23.2

Reference genome

Start

End

64532364/64065394 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-148b-3p ; hsa-mir-9-5p ; hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-484 ; hsa-let-7b-5p ; hsa-mir-543 ; hsa-mir-376a-5p ; hsa-mir-485-5p

Nearest miRNA

hsa-mir-208a/Upstream/3416683; hsa-mir-1185-1/Downstream/29630;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/211586, chr14-CpG: 45/Downstream/228619

Upstream sequence

TAAAAGGATAAGAGGTGGATCATGCAATACTTATGGAAGATTGAAATAATTAATTGTTCAGGATTTAAAAGAGTTAGTAAGTTTCAGGAAAACCATAATA

Downstream sequence

AGAAGTGAGTGCTTCATTTTCAACAAACCATGTAGTTTCTAACATGTTATTTAAATTGTTTTATTACTTTCACCTTGTTTTTCTATAAAACGAGTCCTTA

Target sequence

GTATGTCCCTCTTATTTTTTTTCTTTTCTTTCTTAAGGCCTTGGTGTCAAATCTTATATCAACCAAAGAAGAGTTAATGAAACTACGACAGATCCTTAGACTCTTGAGACTCAGGTGCACAGAAAATGATGGCATATGTTTGCTCAAGATTGTGTCGGCTCTGTGGGAGAAATGGCTGAGTTTGCTGGAAGCTGCTAAAGAGTGGGAGATGTGGTGCGAAGAACTGAAGCAGGAATGGAAATTTGTCAGTGA