VISDB Viral Integration Site DataBase

VIS ID

TVIS30015080

Fusion event

HIV-MPP5 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q23.3

Reference genome

Start

End

67784907/67318372 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-130b-3p ; hsa-mir-155-5p ; hsa-mir-7-5p ; hsa-mir-148a-3p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-93-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520e ; hsa-mir-519c-3p ; hsa-mir-520a-3p ; hsa-mir-519b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-519a-3p ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-302e ; hsa-mir-4639-5p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-6074 ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-5683 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p

Nearest miRNA

hsa-mir-208a/Upstream/1847186; hsa-mir-1185-1/Downstream/123483;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/76442, chr14-CpG: 97/Downstream/41050

Upstream sequence

CATTATAATATTCCATAAAAGCTAAATGAGGTTTGATCAACtttaataaatttttttctaaaataaatatCCTTTAATGCTAATTGACAGATTATGTAAC

Downstream sequence

TAAAAAGATTTAATGAGTTTTAAATTTTATCCTCTATATTTGTGATTAATATCTCTTTTATTTTTTGAAACAGACTGAAGTTAACTAGTCCAGCTCTAAG

Target sequence

AATTTATAAGGCTTTTCTGTCAAGAATTTGAAATATTTGGGAGCAGCACACATTAAACTAATAAAGATAAAACATTATAGATCATTATAATATTCCATAAAAGCTAAATGAGGTTTGATCAACtttaataaatttttttctaaaataaatatCCTTTAATGCTAATTGACAGATTATGTAAC