VISDB Viral Integration Site DataBase

VIS ID

TVIS30015085

Fusion event

HIV-PCNX1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q24.2

Reference genome

Start

End

71455136/70988661 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-17-5p ; hsa-mir-3941 ; hsa-mir-374a-5p ; hsa-mir-510-3p ; hsa-mir-6831-3p ; hsa-mir-4637 ; hsa-mir-590-3p ; hsa-mir-4282 ; hsa-mir-2355-3p ; hsa-mir-4646-3p ; hsa-mir-3912-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5688 ; hsa-mir-495-3p

Nearest miRNA

hsa-mir-208a/Upstream/3546731; hsa-mir-1185-1/Downstream/1528159;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/79976, chr14-CpG: 116/Downstream/331477

Upstream sequence

TGCAGCAGCACAAGCCAGCGAGGAGGCAGTGTCATTTCGCCGTGAACGCAGCACATTTAGGCGCCAGGCAGTACGGCGCCGGCACAATGCAGGGAGTAAC

Downstream sequence

CCTACCCCTCCTACATTGCTCATCGGATCACCCCTAAGGTATGGTATTTTCAATTCCACCAAGTTTAGCATGCATGTAACAACCCTTCTAATCTGTTCCG

Target sequence

ATAGATTGACAGTATACATGTGAAAACAGTTTGGATTAATAAGTTCACTTTACCCATGAGGGTGGGAAGTCAAGGGAAAGCCAGGCTCAGCTGCTATTTACATCTCTGACCTAGGCTCTTGTTTGACCTAAGTCTGTCTTGATGCAGCAGCACAAGCCAGCGAGGAGGCAGTGTCATTTCGCCGTGAACGCAGCACATTTAGGCGCCAGGCAGTACGGCGCCGGCACAATGCAGGGAGTAAC