VISDB Viral Integration Site DataBase

VIS ID

TVIS30015093

Fusion event

HIV-PPP4R3A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.12

Reference genome

Start

End

91959689/91493552 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-183-5p ; hsa-mir-30d-5p ; hsa-mir-642b-3p ; hsa-mir-4719 ; hsa-mir-642a-3p ; hsa-mir-3613-3p ; hsa-mir-425-5p ; hsa-mir-26b-5p ; hsa-mir-26a-5p

Nearest miRNA

hsa-mir-1260a/Upstream/14227262; hsa-mir-1185-1/Downstream/2454674;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/74529, chr14-CpG: 164/Downstream/15774

Upstream sequence

actacactctagactgggttctagactgggtgataagagatcctgtctcaaaaaacaaaggcaaggtgcagtggctcatgcctgtaatcccagcactttg

Downstream sequence

ggaggtcgagatgggaggattgcttgaggCTAGCCTGGTCTCATATATAGGATGGTGAGACCCCATACtatatatttttaatataaaatttaaaaaaGGT

Target sequence

TTAgctggatgaggtagggcatgcctataattctagctactcaagagacaggcaggaggatctcctgagcccagaatctcaagactacagtgagccatgattgcgccactacactctagactgggttctagactgggtgataagagatcctgtctcaaaaaacaaaggcaaggtgcagtggctcatgcctgtaatcccagcactttg