Basic Information
VIS ID
TVIS30015097
Fusion event
HIV-chr14 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98084562/97618225 (Hg38)
End
98084509/97618225 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/2480239; hsa-mir-1185-1/Downstream/2491194;
Nearest TSS
ENST00000550708/Upstream/159355; ENST00000557072/Downstream/68402;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/398616, chr14-CpG: 53/Downstream/1499843
Nearby gene
LINC02291(No orient, 14421)
Upstream sequence
aaattaaatatgtaattaccagatgatccagcaattgcaatgtttagtgagcaatttatatcagagacatgagcaatttataccacagaaatggagactt
Downstream sequence
aagtttacacaaaaatctgtacacaaatatagcagttttatttatagtagcaaaaaaattgaaatagcctagatatcattttatgagtaaattgttaaac
Target sequence
tgagcaatttatatcagagacatgagcaatttataccacagaaatggagactt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate