VISDB Viral Integration Site DataBase

VIS ID

TVIS30015102

Fusion event

HIV-GPR132 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.33

Reference genome

Start

End

105527809/105061122 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1178-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-3907 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-6719-3p ; hsa-mir-766-3p ; hsa-mir-1304-3p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-888-3p

Nearest miRNA

hsa-mir-1185-1/Upstream/195711; hsa-mir-4507/Downstream/89656;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/15152, chr14-CpG: 140/Downstream/25774

Nearest cancer related gene

GPR132(OG, No orient, 0)

Upstream sequence

GCTGCTGACGTCCAGATCCCGCCACGTGCCTGACCTTTGGGCACCACAGCCTGGCGAGGATGCCTGGAAAGAGTCAGTGGGCCCAGCAGGAGGCCCGGTG

Downstream sequence

GGCCCTCTCTCCGGCCAGCCCAGTGGCCCCACCCGCCAGCTGCAGTGTCGCGGTCTGTCCTGGCCCGGGGCCAGGGCTGTTTCCTCCACAGAAAGGGGCG

Target sequence

GGAACAACCCAAGGCAGGGCAGCCGGAGAGCCGGGTCCACTGGGACGTCCCGACTCCCTCGCACCGAGGTCCAGCTCCTCACCACGCATGGCCAACCAGGCTTGGGCGCCGGGGGAGCCCTGCACCAGCCCTTTGCTTATCAGAGCACATCCAGGCTTTGTCTGGCATTCCCTGCCGGACAGGCCCACAGCCTCAGGCAGCCCACCGGCCTCTTCCGAGGGCCTTCCTGGACCAGGGTCCGGGGTCCCGCCAGCA