Basic Information
VIS ID
TVIS30015104
Fusion event
HIV-chr15 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
35429463/35137262 (Hg38)
End
35429383/35137262 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1233-1/Upstream/608891; hsa-mir-10393/Downstream/234994;
Nearest TSS
ENST00000557528/Upstream/52152; ENST00000560866/Downstream/32436;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/15023, chr15-CpG: 56/Downstream/408663
Upstream sequence
AACTTTTCCCCCACTCATTTCATACCTATGTTAACCTTGTCTAGAATCCATGCTTATTGTCTAAGGAAACCTAATGGCATGTGACATGGCTCTGGCTCTA
Downstream sequence
TAGGTCTTTTTGGAACCAGGGTTTTTTTCTGAGATAATAAAATGTGTTAAATAAGCTTTAAATTTTATATGGCCATAGTCTCCCTCCTTTCAGGtttttt
Target sequence
CATACCTATGTTAACCTTGTCTAGAATCCATGCTTATTGTCTAAGGAAACCTAATGGCATGTGACATGGCTCTGGCTCTA
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
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