Basic Information
VIS ID
TVIS30015130
Fusion event
HIV-MYO5A integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.2
Reference genome
End
52791393/52499158 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10393/Upstream/221958; hsa-mir-11181/Downstream/2873782;
Upstream sequence
CAAAATTGTGATGTGACTGAAATTGCTTTTAGTGGCCCAAAGTATCTCCTTTTTTCTTTGCCCTTTTACTCCTGAAGCAGCTTCTCCTCCATCCCCAGTT
Downstream sequence
TACTTGTTTACCATAAGACATTAAAGATATTTAAGCTTTTAAAATAACAACTTGCAAAGAGGATGGCCAAGAAAAGGTTAGAAGATTCTGAAGCATTAAT
Target sequence
CTAGCTACCTATCTCATTCTCAGTGAAGGAAGGACTGA
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate