VISDB Viral Integration Site DataBase

VIS ID

TVIS30015132

Fusion event

HIV-FAM214A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q21.3

Reference genome

Start

End

52894531/52602570 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-32-5p ; hsa-mir-15b-5p ; hsa-mir-222-3p ; hsa-mir-218-5p

Nearest miRNA

hsa-mir-10393/Upstream/325370; hsa-mir-11181/Downstream/2770370;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/33357, chr15-CpG: 108/Downstream/75963

Upstream sequence

agacgtatttgctataaaaataaatcctcactgccctgggttatagatgtgggatagtttcatgtttcccctactaatactagatggatttcatgggttc

Downstream sequence

caatttagtttttatggctatttcttagctagacatctctgaatctcataggtagtataaattcagaacccctaccatgtgtggcttagatttaggtaca

Target sequence

tactttaaacagttatttttaactctcaaattgctctgataacagagttcctatatgtgcatcctcccatttcttgctcctgctgattcttttaaggtgctttgtaattttttttcctctaaggtcatcttcagtaagacgtatttgctataaaaataaatcctcactgccctgggttatagatgtgggatagtttcatgtttcccctactaatactagatggatttcatgggttc