VISDB Viral Integration Site DataBase

VIS ID

TVIS30015140

Fusion event

HIV-CLPX integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q22.31

Reference genome

Start

End

65454101/65161948 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-617 ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-4511 ; hsa-mir-4325 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6778-3p ; hsa-mir-6804-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-6504-3p ; hsa-mir-4438

Nearest miRNA

hsa-mir-10393/Upstream/399433; hsa-mir-11181/Downstream/557298;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/28053, chr15-CpG: 99/Downstream/22508

Upstream sequence

TGTAATTTTATTACATGTGATAAATGTCATGCCCAAGTTGGTACACAAGTTATATTCTCATGGCTCATCCTATATATAGTACACTTCAAATAGTGGATAT

Downstream sequence

ATAATACTACTTGGTTCAAAGGCAAATGTAAAAACATCAAACTTAGCTAATTTTCTTTATTTCAATTACTAAAACAAAAGGCCATGTGAATCTTTCTATG

Target sequence

ATTCTATTGCACTTACTGTATTTCTTAATTTTACCACGCATGGTATAATCAGTATTTCTATAAATTTAAAAATAACTGGGGATAATGTAATTTTATTACATGTGATAAATGTCATGCCCAAGTTGGTACACAAGTTATATTCTCATGGCTCATCCTATATATAGTACACTTCAAATAGTGGATAT