Basic Information
VIS ID
TVIS30015144
Fusion event
HIV-chr15 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
70413226/70120887 (Hg38)
End
70413171/70120887 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/41419; hsa-mir-11181/Downstream/2466330;
Nearest TSS
ENST00000557528/Upstream/22711; ENST00000558226/Downstream/77622;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/20020, chr15-CpG: 56/Downstream/464154
Nearby gene
TLE3(No orient, 22970)
Upstream sequence
cttgctatgtcacccaggctggtctcaaactcctgacctcaagcaatcctcctgcctcagcctcccagggtactgggattacagacatgagccaccacac
Downstream sequence
caggccacttccctccctttctatacctcagttcaggtggggcttccttagagaggccctctctgctcccccgggcctgcttacacgtgctgttacaggc
Target sequence
atcctcctgcctcagcctcccagggtactgggattacagacatgagccaccacac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate