VISDB Viral Integration Site DataBase

VIS ID

TVIS30015146

Fusion event

HIV-NPTN integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q24.1

Reference genome

Start

End

73910473/73618365 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-455-3p ; hsa-mir-125b-5p ; hsa-let-7b-5p ; hsa-mir-1183 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-224-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-6083 ; hsa-mir-218-5p ; hsa-mir-1277-5p ; hsa-mir-4291 ; hsa-mir-494-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-3617-3p ; hsa-mir-3074-3p ; hsa-mir-3646 ; hsa-mir-646 ; hsa-mir-3662 ; hsa-mir-548c-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-513a-5p ; hsa-mir-938 ; hsa-mir-4328 ; hsa-mir-205-3p ; hsa-mir-4282 ; hsa-mir-129-1-3p ; hsa-mir-129-2-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p

Nearest miRNA

hsa-mir-10393/Upstream/318386; hsa-mir-11181/Downstream/792992;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/175097, chr15-CpG: 97/Downstream/14327

Upstream sequence

GAGTTAAAAAAAATATATGTTAGAAAGATCTCTACCATACAAAGAAAGTCATTAAACAGCTATTAGGAAATGCAAAAATACCCACTCACAATATGGAAAC

Downstream sequence

ACTCCTGCTCAATAAACACCAGTCATCTAAACTTTTATATTACACTTAGAATATGGAACCACTACCTCTCTGTCTAAAAAGGATTAAAATAGAATTTAAA

Target sequence

CGCCTGCCTGGAATTCTTTCTGCCTCGATGTCCTCACTTCCATCAGGAATTAATTTCCTTTGTGACTAGGCCTTGAAGACCAGCTGAGCTGTTTCTGAGAAACATGGGCATTATGACCCTTTGGGGATTAAAAGAGTTAAAAAAAATATATGTTAGAAAGATCTCTACCATACAAAGAAAGTCATTAAACAGCTATTAGGAAATGCAAAAATACCCACTCACAATATGGAAAC