VISDB Viral Integration Site DataBase

VIS ID

TVIS30015148

Fusion event

HIV-SCAMP2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q24.1

Reference genome

Start

End

75156905/74864427 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-744-5p ; hsa-mir-23a-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-4709-3p ; hsa-mir-24-3p ; hsa-mir-1256 ; hsa-mir-892c-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-5047 ; hsa-mir-3944-5p ; hsa-mir-1301-3p ; hsa-mir-4660 ; hsa-mir-605-3p ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-6854-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-3714 ; hsa-mir-519a-3p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-17-5p ; hsa-mir-6765-3p ; hsa-mir-328-3p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-6851-3p ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-18a-3p ; hsa-mir-4766-5p ; hsa-mir-3667-3p ; hsa-mir-3140-5p ; hsa-mir-6752-3p ; hsa-mir-1914-3p ; hsa-mir-3184-5p ; hsa-mir-3929 ; hsa-mir-423-5p ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-5194 ; hsa-mir-5698 ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6794-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-7160-5p

Nearest miRNA

hsa-mir-10393/Upstream/23720; hsa-mir-11181/Downstream/489184;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/20863, chr15-CpG: 51/Downstream/8605

Upstream sequence

tgggattacaggcttgagccaccgcacctggccgagaatctttaaaaagagcttgcatgtgttcagaagagagaaggttatggaggctgtggaggggtgt

Downstream sequence

GCAGTGAAGGGAGTGCAACAGCATGGTAGGACAACAGCGGGAAGACTGGCTAGGACACAACTGTCAACATGGGTGAAGTGAGGACCAAATTGAGGGACAG

Target sequence

gtggagagaagagtctggagtatcagggaaccagtctgaagagggtggggccagattgtgGGACTTTGGATGTTGCTCTACAGGCAACGGGGAACAACTAGAGATTTGCAGTCAGGGGTGACATGATCATTCTATCA