VISDB Viral Integration Site DataBase

VIS ID

TVIS30015149

Fusion event

HIV-TBC1D2B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q25.1

Reference genome

Start

End

78336402/78044225 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-26b-5p ; hsa-mir-484 ; hsa-mir-3915 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-3202 ; hsa-mir-3928-3p ; hsa-mir-5093 ; hsa-mir-194-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-1252-3p ; hsa-mir-6890-3p ; hsa-mir-603 ; hsa-mir-8485

Nearest miRNA

hsa-mir-10393/Upstream/2281910; hsa-mir-11181/Downstream/1165563;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/99483, chr15-CpG: 103/Downstream/32950

Upstream sequence

gaaatgagaaggaactgctaatgtaatgagtttctttttggatcgatgaaaacatttaaaaattgattgtggtgatggaagcacaactctgtgaatatac

Downstream sequence

caaaaatcattgaattgtacattttaaatgggtgaattgtacagtgtgtgaattgtatatcaataaagttcttctttaaaaaaCAAGTCAACCATAgtgg

Target sequence

tagagatagaaagttgattaggagttgcctacggctgagggttgacagaggagaaggggttgggggaaatgagaaggaactgctaatgtaatgagtttctttttggatcgatgaaaacatttaaaaattgattgtggtgatggaagcacaactctgtgaatatac