VISDB Viral Integration Site DataBase

VIS ID

TVIS30015153

Fusion event

HIV-ZSCAN2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q25.2

Reference genome

Start

End

85161365/84618451 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-1206 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-2276-3p ; hsa-mir-1281 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-4485-5p ; hsa-mir-6832-3p ; hsa-mir-6885-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4709-3p ; hsa-mir-4753-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-3140-3p ; hsa-mir-627-3p ; hsa-mir-130b-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-1193 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-1197 ; hsa-mir-1273a ; hsa-mir-8065

Nearest miRNA

hsa-mir-10393/Upstream/1551036; hsa-mir-11181/Downstream/762145;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/17084, chr15-CpG: 26/Downstream/12807

Nearby gene

ZSCAN2(No orient, 1841)

Upstream sequence

aggttgcagtgagcctagatctcgccactgcagtccaggctgggtgaccaagtgagactctgtcttaaaaaatagaaaaaaGTGCagctttttttaggat

Downstream sequence

tgaggtcaagagggaaatttcctcctcaggctcatcaagaggacattgtgtggtataaacaatgtcatcaacaacttcctggcagcattaatgttcccaa

Target sequence

AGTTcgagcgcgatagctcacacctgtaatcccagcactataagaggcccaggcgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatagtgaaaccccatctctactaaaaatacaaaaattagctgggcgtggtggtgtgcgcctgtagtcccagctactctggaggctgaggcaggagaatctcttgaactcgggaggctgaggttgcagtgagcctagatctcgccactgcagtccag