Basic Information
VIS ID
TVIS30015163
Fusion event
HIV-chr15 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
93360948/92817718 (Hg38)
End
93360828/92817718 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/2810877; hsa-mir-1302-10/Downstream/86681;
Nearest TSS
ENST00000557528/Upstream/7834; ENST00000610332/Downstream/1880;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/7866, chr15-CpG: 99/Downstream/64997
Nearby gene
ASB9P1(No orient, 20610)
Upstream sequence
cgtcctcacccacttctagcctttattcatgccgttctctttactgaggtccttcccaactctgccagcttagactcctttgagaccagctcatcgaagt
Downstream sequence
cacttcctctttgaagtttctctgtcccccgcccctgccatcaatcttagataagcttaacttgatgtttctgctctctctctaatcaaactatgtgatc
Target sequence
tgttttttaaatatccacaacgtcctcacccacttctagcctttattcatgccgttctctttactgaggtccttcccaactctgccagcttagactcctttgagaccagctcatcgaagt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate