VISDB Viral Integration Site DataBase

VIS ID

TVIS30015166

Fusion event

HIV-CAPN15 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

583631/533593 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-98-5p ; hsa-let-7d-3p ; hsa-mir-671-5p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-320a ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-92a-2-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-142-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-608 ; hsa-mir-4447 ; hsa-mir-4469 ; hsa-mir-4472 ; hsa-mir-4651 ; hsa-mir-5590-3p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6796-5p ; hsa-mir-6803-5p ; hsa-mir-6842-5p ; hsa-mir-6867-3p ; hsa-mir-7110-5p ; hsa-mir-1321 ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-6754-5p ; hsa-mir-6878-3p ; hsa-mir-6883-5p ; hsa-mir-486-3p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-3176 ; hsa-mir-3922-3p ; hsa-mir-140-3p ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-6742-5p ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-4685-3p ; hsa-mir-6835-5p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-1200 ; hsa-mir-1207-5p ; hsa-mir-149-5p ; hsa-mir-185-3p ; hsa-mir-24-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-3064-5p ; hsa-mir-3126-5p ; hsa-mir-3909 ; hsa-mir-3918 ; hsa-mir-4284 ; hsa-mir-4324 ; hsa-mir-4485-5p ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4508 ; hsa-mir-4707-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-4781-5p ; hsa-mir-4794 ; hsa-mir-5001-5p ; hsa-mir-513a-5p ; hsa-mir-5186 ; hsa-mir-544b ; hsa-mir-6132 ; hsa-mir-615-5p ; hsa-mir-6504-5p ; hsa-mir-664a-5p ; hsa-mir-6780a-3p ; hsa-mir-6781-5p ; hsa-mir-6836-5p ; hsa-mir-6852-3p ; hsa-mir-6856-3p ; hsa-mir-6875-5p ; hsa-mir-6877-5p ; hsa-mir-7150 ; hsa-mir-744-5p ; hsa-mir-762 ; hsa-mir-7845-5p

Nearest miRNA

hsa-mir-6859-4/Upstream/516474; hsa-mir-11401/Downstream/1723;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/5082, chr16-CpG: 47/Downstream/4058

Upstream sequence

GCCTGCCCAAGCTGGGCACCTTTCCCTGGCAGTGCCTGGGAAGCTCGGCCGCCCTCCCTGGCTGGTGCTGCTCTGCAGCCCCGCTCATGGACTCTTGCCC

Downstream sequence

TCCGGACAGGATCTTGAATGGCCCTGTCTGCGGTCCTGGCTGGCCGGAGGTTGACCGCACTGGACAGGTCAAGGGCCTTAAACCAGGGTAGTGAGGAGCC

Target sequence

ACGGCCTGCTCCTTGTAGCAGGGTCGGGCCGTGGGAGG