VISDB Viral Integration Site DataBase

VIS ID

TVIS30015188

Fusion event

HIV-ADCY9 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

4094401/4044603 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-98-5p ; hsa-let-7d-5p ; hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-33b-5p ; hsa-mir-331-3p ; hsa-mir-10a-5p ; hsa-mir-99a-5p ; hsa-mir-181b-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-6827-5p ; hsa-mir-3656 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-6798-5p ; hsa-mir-1225-3p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-3943 ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-3201 ; hsa-mir-4791 ; hsa-mir-8076 ; hsa-mir-1246 ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-6516-5p ; hsa-mir-29b-2-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-4436b-5p ; hsa-mir-185-3p ; hsa-mir-4656 ; hsa-mir-4448 ; hsa-mir-4660 ; hsa-mir-3177-3p ; hsa-mir-4508 ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-6736-3p ; hsa-mir-181a-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-3671 ; hsa-mir-4262 ; hsa-mir-4789-5p ; hsa-mir-5004-5p ; hsa-mir-607 ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-7154-3p

Nearest miRNA

hsa-mir-1225/Upstream/559134; hsa-mir-11401/Downstream/626715;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/65191, chr16-CpG: 271/Downstream/70204

Upstream sequence

ACTTACATTTTGGAGATCTGGATTTCTCCATTATAAACCTATGGAATCAAATCATTTAAAATCTAGTTACCAGAGAAACCTCGGTTTAATATTAACAAAC

Downstream sequence

ATACTTCCTTTAACCACGAGCCACTTTAATGTATATCAGTTTTATCTCTGGAGCTTCATAGATCCCAACAGAGAAGGCTGATCTATTTTCAGAGAAACAT

Target sequence

TGAAGTAAATAATAAAATTCTGTGATAGGACGGAGCCATTTTCTTCCAGGCTATTTACCAAACACAGCAAAGGAAATCAAAAAAAGGCTTCCCATATAGTAAAACTTACATTTTGGAGATCTGGATTTCTCCATTATAAACCTATGGAATCAAATCATTTAAAATCTAGTTACCAGAGAAACCTCGGTTTAATATTAACAAAC