Basic Information
VIS ID
TVIS30015190
Fusion event
HIV-chr16 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
11755860/11662004 (Hg38)
End
11755840/11662004 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/355477; hsa-mir-11401/Downstream/1058317;
Nearest TSS
ENST00000527434/Upstream/25623; ENST00000329565/Downstream/6410;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/74585, chr16-CpG: 143/Downstream/5881
Nearby gene
SNN(No orient, 6428)
Upstream sequence
AGGGggccaggcgtggtggctcatgtctataatcccagcactttgggaggctgaggtgggaggatcacctgagtccaggaggagttaagacaagcctggg
Downstream sequence
caacacagtgagatccatctctacaaaaataaaataaaattagccgtgcatggtggcatgcacctgtactcctagctacttgggaggctgaggtgggagg
Target sequence
ggagttaagacaagcctggg
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate