VISDB Viral Integration Site DataBase

VIS ID

TVIS30015192

Fusion event

HIV-CPPED1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.12

Reference genome

Start

End

12784231/12690192 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-19b-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-4266 ; hsa-mir-6831-3p ; hsa-mir-6888-5p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-3177-5p ; hsa-mir-511-3p ; hsa-mir-4436b-5p ; hsa-mir-625-3p

Nearest miRNA

hsa-mir-1225/Upstream/1383665; hsa-mir-11401/Downstream/30129;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/121372, chr16-CpG: 41/Downstream/113316

Upstream sequence

TTTAAGTGAGCTTTTTTTTTGGCAGCCATAATCTTTAGATAATGAGCCCACCTGGGCTTGAACTGGTGAGGGGCTGGCCAGAGTCTGCGGGGGTGGGTAC

Downstream sequence

gtggtggggagcacccatagtcctggctatttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgaggtcatgcca

Target sequence

AGATCCCTCCCTGTTTCATGAAAGACACCATCAAGAAggccaagtgtggtggctcatgcgtataaccacagcactttgggaggccaaggcaggcagactgcttgagctcaggagttctccagaccaacttgggcaacacggtgaaacccagtctttattgaaaatacaaaaattagccaggc