VISDB Viral Integration Site DataBase

VIS ID

TVIS30015230

Fusion event

HIV-MRTFB integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.12

Reference genome

Start

End

14308074/14214463 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-29c-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-607 ; hsa-mir-3156-3p ; hsa-mir-3671 ; hsa-mir-4433a-5p ; hsa-mir-3907 ; hsa-mir-3145-3p ; hsa-mir-139-5p ; hsa-mir-4735-5p ; hsa-mir-4301 ; hsa-mir-181a-2-3p ; hsa-mir-4762-5p ; hsa-mir-5002-5p ; hsa-mir-5588-3p ; hsa-mir-32-3p ; hsa-mir-6715b-3p ; hsa-mir-1256 ; hsa-mir-8076 ; hsa-mir-3688-3p ; hsa-mir-183-5p ; hsa-mir-190a-5p ; hsa-mir-190b ; hsa-mir-19b-3p ; hsa-mir-19a-3p

Nearest miRNA

hsa-mir-1225/Upstream/1494092; hsa-mir-11401/Downstream/89504;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/142664, chr16-CpG: 54/Downstream/71004

Nearest cancer related gene

MRTFB(OG, No orient, 0)

Upstream sequence

ctgaaaacttctcagacattgagagacaattgtcaggtagaagggaggtttgttctctgggcctaatgataggattagagttagtattaagttaggttga

Downstream sequence

tattaccaagtattagattataactcaacataagaagtaatatcttaaaggtctgacatgtccagaaatgaaatcttcaggaggtgatatggctaccatt

Target sequence

ATTCTCGAAAGCTTATACCTCCACCATCAACTCCCAAGTTACATTTTCTTTCATTGTTTTGCTTCTCCAACGAATTTATTAAGACTAGGAGCTTGATTCTGTGGTAGTCTtgggtgtgttaagtattgagaagatacagaaacaatctgaaaacttctcagacattgagagacaattgtcaggtagaagggaggtttgttctctgggcctaatgataggattagagttagtattaagttaggttga