VISDB Viral Integration Site DataBase

VIS ID

TVIS30015316

Fusion event

HIV-PARN integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.12

Reference genome

Start

End

14681372/14587752 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-377-3p ; hsa-mir-8485 ; hsa-mir-521 ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-376a-2-5p

Nearest miRNA

hsa-mir-1225/Upstream/278381; hsa-mir-11401/Downstream/313756;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/284534, chr16-CpG: 55/Downstream/41993

Upstream sequence

CTAATTTCTTCTCATCACTTCTTCTAAAGGTAGATGGAAAAAAACAAAACAAAACATTTTCTTTCTCTGACAATGCCAGAACATAAAGAAGTTAAGTTAC

Downstream sequence

TTACCAGGTAGCCTTAGTAATAAAGTGAAGGATAAAACTGCTTATCCTAACCCACTTACTACTCTACAACAAATCACTTGCTCTTTCTACCAGAATTTAA

Target sequence

tcaagtcagggtctcactatgttgcccagactagccttgaactcctgcactcaagcaattctcctgtaacagcctctcaagtagcaggcactgcaggtatgcaccaccacacccagcCTTCTAATTTATTAGGCTTTCTAATTTCTTCTCATCACTTCTTCTAAAGGTAGATGGAAAAAAACAAAACAAAACATTTTCTTTCTCTGACAATGCCAGAACATAAAGAAGTTAAGTTAC