VISDB Viral Integration Site DataBase

VIS ID

TVIS30015319

Fusion event

HIV-SMG1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p12.3

Reference genome

Start

End

18839405/18828229 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-877-5p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-361-5p ; hsa-mir-181a-5p ; hsa-mir-106a-5p ; hsa-mir-100-5p ; hsa-mir-17-3p ; hsa-let-7b-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-3184-3p ; hsa-mir-6890-3p ; hsa-mir-4709-5p ; hsa-mir-4740-5p ; hsa-mir-4267 ; hsa-mir-891a-3p ; hsa-mir-1256 ; hsa-mir-142-3p ; hsa-mir-6515-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-1273a ; hsa-mir-31-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-5681a ; hsa-mir-6847-5p ; hsa-mir-4802-5p ; hsa-mir-548aw ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4795-3p ; hsa-mir-6499-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-4302 ; hsa-mir-126-5p ; hsa-mir-183-5p ; hsa-mir-4666a-3p ; hsa-mir-648 ; hsa-mir-4519 ; hsa-mir-338-5p ; hsa-mir-5583-3p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-4422 ; hsa-mir-4282 ; hsa-mir-6835-3p ; hsa-mir-548n ; hsa-mir-539-5p ; hsa-mir-545-5p ; hsa-mir-330-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-4311 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-8070 ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-502-5p ; hsa-mir-4687-3p ; hsa-mir-7974 ; hsa-mir-4679 ; hsa-mir-3189-3p ; hsa-mir-4762-5p ; hsa-mir-141-5p ; hsa-mir-212-5p ; hsa-mir-510-3p ; hsa-mir-488-3p ; hsa-mir-3169 ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-5698 ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-1304-3p ; hsa-mir-4485-5p ; hsa-mir-5693 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-1193 ; hsa-mir-6845-3p ; hsa-mir-6812-3p ; hsa-mir-2392 ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-5584-5p ; hsa-mir-6859-5p

Nearest miRNA

hsa-mir-1225/Upstream/333653; hsa-mir-11401/Downstream/2677820;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/26152, chr16-CpG: 119/Downstream/97479

Upstream sequence

GGCTTGTGGTCTATTGATAAGTAGATCTTCATGTTGCCACTGTTGAGAGAAAAAGAAATGTATTAAAATCAGCAGGAAAAAAGCGTTTAGATAAATAAGG

Downstream sequence

GAAGGGAGGCGCAACCTAGGACTGGCGGAAGAGAAAAAAATCCCAGCTGCAGCCAATGGGAGGTAAGCAGGGAGAAGTAACAGAAAAGACACACTGAAAA

Target sequence

TCATGCTGGTTAGGATAGCAGACCGTGGGGGAGGTGTGACTGACATGGCTTGTGGTCTATTGATAAGTAGATCTTCATGTTGCCACTGTTGAGAGAAAAAGAAATGTATTAAAATCAGCAGGAAAAAAGCGTTTAGATAAATAAGG