VISDB Viral Integration Site DataBase

VIS ID

TVIS30015322

Fusion event

HIV-GGA2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p12.2

Reference genome

Start

End

23475911/23464510 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-24-3p ; hsa-mir-92a-3p ; hsa-mir-26a-5p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4252 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-4698 ; hsa-mir-1295b-3p ; hsa-mir-3186-5p ; hsa-mir-3682-3p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-143-3p ; hsa-mir-539-5p ; hsa-mir-4756-3p ; hsa-mir-1272 ; hsa-mir-5680 ; hsa-mir-383-5p ; hsa-mir-3607-3p ; hsa-mir-499b-5p ; hsa-mir-4494 ; hsa-mir-548c-3p ; hsa-mir-6501-3p ; hsa-mir-8485 ; hsa-mir-298 ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-7977 ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-4746-3p ; hsa-mir-6089 ; hsa-mir-4284 ; hsa-mir-4672 ; hsa-mir-6768-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-7162-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-544b ; hsa-mir-6849-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6765-3p ; hsa-mir-224-5p

Nearest miRNA

hsa-mir-1225/Upstream/1958375; hsa-mir-11401/Downstream/738606;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/11202, chr16-CpG: 29/Downstream/45749

Upstream sequence

CAACTTGAATTTGATCCCATAAAGTCAGGCATCAGGAAGCCATTCAGAATTTTTCACCCTGTCAGATGCTCAGATTTGCTAGAGAACTCTGGTAGTGGCA

Downstream sequence

TAAGTGCAGGGAGGACATGATGTGGGATTATTTAGAAAACAGGCCAAATGACATGCAACTACTCTGCGGATACAGACGAAGCAGGAATCAGGGACCCAAT

Target sequence

AGAACCAGAGCTGTTACTCAGAATTGGGACAGAGGCATTGTCCCAAAAAAAAAAAAGCCCAAATCAGAGCAGTGGCAATG