Basic Information
VIS ID
TVIS30015331
Fusion event
HIV-chr16 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29726370/29715049 (Hg38)
End
29726419/29715049 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/115784; hsa-mir-11401/Downstream/788870;
Nearest TSS
ENST00000527434/Upstream/19252; ENST00000565600/Downstream/30198;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/19912, chr16-CpG: 36/Downstream/69991
Nearby gene
QPRT(No orient, 17056)
Upstream sequence
agagtccctaagacaacttctgacagcatggaactccttgggaaaaacagaggaggtgccacaaaccctgttttggaaaaaaaacctgttttcctcatga
Downstream sequence
gttctgttatgtattgtgttatctaccgttttgagttttgggggtatcaaattacttcacattataaaagagctttgatgtgtaataactaggtagaaaa
Target sequence
aacccccaaaattaaaagctgatagttccctctcaaaaccaaaggctct
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
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