Basic Information
VIS ID
TVIS30015339
Fusion event
HIV-ZNF720 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31740868/31729547 (Hg38)
End
31740791/31729547 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF720
Nearest miRNA
hsa-mir-1225/Upstream/835562; hsa-mir-11401/Downstream/2434031;
Nearest TSS
ENST00000527434/Upstream/16241; ENST00000561814/Downstream/144211;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/15797, chr16-CpG: 56/Downstream/89739
Upstream sequence
aacaaacgcacacttgtgataattaacccactgctgtgataaggacattaatacattcatgcaggcagagctctcatggcctaatcacttcttaaaagtc
Downstream sequence
ccacttcttaattctatcacagtggctattaaattttaacctaaattttggaagtgacattcaGTCTTTAtcaatgtctgtttattggataatttaatct
Target sequence
taacccactgctgtgataaggacattaatacattcatgcaggcagagctctcatggcctaatcacttcttaaaagtc
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
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