Basic Information
VIS ID
TVIS30015340
Fusion event
HIV-ZNF720 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31753282/31741961 (Hg38)
End
31753310/31741961 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF720
Nearest miRNA
hsa-mir-1225/Upstream/847976; hsa-mir-11401/Downstream/2421617;
Nearest TSS
ENST00000527434/Upstream/28655; ENST00000561814/Downstream/131797;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/28211, chr16-CpG: 56/Downstream/77325
Upstream sequence
tgccaaagtcaatgtctagaatggtatttgccagattttcttctagtatttttattaagtttctgaatttaaatctttaatcatcttgagttaattttta
Downstream sequence
cattcgtttgcatgtggttagtcagtcatcctagaaccatttattaaatagggagtcctttcactattgcttatttttgttgactttgtggaacatcaga
Target sequence
tatatggtgaaatgtaggcgtctatgtt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate