VISDB Viral Integration Site DataBase

VIS ID

TVIS30015348

Fusion event

HIV-CYLD integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q12.1

Reference genome

Start

End

50793634/50760144 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-197-3p ; hsa-mir-181b-5p ; hsa-mir-182-5p ; hsa-mir-320a ; hsa-mir-362-5p ; hsa-mir-500a-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6740-3p ; hsa-mir-942-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-605-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-1200 ; hsa-mir-7975 ; hsa-mir-378a-5p ; hsa-mir-5571-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-1236-3p ; hsa-mir-3140-5p ; hsa-mir-3142 ; hsa-mir-877-3p ; hsa-mir-1245b-5p ; hsa-mir-335-3p ; hsa-mir-3156-3p ; hsa-mir-188-3p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-659-5p ; hsa-mir-4751 ; hsa-mir-3667-3p ; hsa-mir-4301 ; hsa-mir-4528 ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-130b-3p ; hsa-mir-922 ; hsa-mir-126-5p

Nearest miRNA

hsa-mir-1225/Upstream/17767; hsa-mir-11401/Downstream/5485376;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/17426, chr16-CpG: 28/Downstream/81008

Nearest cancer related gene

CYLD(TSG, No orient, 0)

Upstream sequence

caatcaacatcttacttgctttatatgtatctgtccacctctctattcacgtacttatccgtcacgttttcttgtgcatttcacattaagttgcagatac

Downstream sequence

cagttcacttcctcctaaatacttcagtgtgcatctaattaactagagataagtatttagggttttctttttcatttcagatagaagtcacacatataat

Target sequence

tccttttccacacttggtactgattaaaatttttgccagcctgacagctgagaaatggtatctcaaggtggtttaaaagtttgtagttccctgattacaagtaggattgaacagccttttatatgtttatacaacatttgtgtcttctattaaacacgtattttttgcctgtttttctgttgagttgctcatttattgattcatgagttctctaGTTTTAGAATTTTAATAAAACATCTTTTaatgttttgttat