VISDB Viral Integration Site DataBase

VIS ID

TVIS30015358

Fusion event

HIV-NLRC5 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q13

Reference genome

Start

End

57030168/56996736 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-216b-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-452-3p ; hsa-mir-6504-5p ; hsa-mir-4736 ; hsa-mir-3064-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-3126-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-149-5p ; hsa-mir-34a-5p

Nearest miRNA

hsa-mir-1225/Upstream/92383; hsa-mir-11401/Downstream/775553;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/6880, chr16-CpG: 133/Downstream/95396

Upstream sequence

TTTTGGAAATTATACACTTACCCCTAGAGGGTGAGTTTGTGGGGGAAATTTCATAATGTATACTTCCAGAATATTTAGAACTTTCCAAATGAGTACAGGT

Downstream sequence

TATGTTCGTAAACAGGAAAAATAATAAAGACATAATAAAATGATAATTTAGTTTTAAAAGACGACCATTTGTTGAAAGCAGTATTATATTTCAGTTAGGA

Target sequence

agcctctatttcccaggctcaatcgatcctcctgcctcagcctcccaagtagatgggactacaggtgcgcaccaccacacctggctaattgttttttgtttttatttttgatagagacgaggtctcattacgttgcccaggctgatctcaaactcctgagctcaagcagttttcctgccttagcctcccaaagtgctgggattacaggtgtgagcctccatgccccacccttgagtttcttttcgatgatacctt