VISDB Viral Integration Site DataBase

VIS ID

TVIS30015370

Fusion event

HIV-NFATC3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q22.1

Reference genome

Start

End

68131129/68096991 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-361-3p ; hsa-mir-324-3p ; hsa-let-7b-5p ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-185-5p ; hsa-mir-7975 ; hsa-mir-320a ; hsa-mir-218-5p ; hsa-mir-3163 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548e-5p ; hsa-mir-30a-3p ; hsa-mir-103a-2-5p ; hsa-mir-202-5p ; hsa-mir-3154 ; hsa-mir-337-3p ; hsa-mir-3977 ; hsa-mir-4777-5p ; hsa-mir-493-3p ; hsa-mir-518d-5p ; hsa-mir-518e-5p ; hsa-mir-518f-5p ; hsa-mir-519a-5p ; hsa-mir-519b-5p ; hsa-mir-519c-5p ; hsa-mir-520c-5p ; hsa-mir-522-5p ; hsa-mir-523-5p ; hsa-mir-526a ; hsa-mir-6508-5p ; hsa-mir-6885-3p ; hsa-mir-8067 ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-1225/Upstream/894596; hsa-mir-11401/Downstream/136435;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/10908, chr16-CpG: 253/Downstream/138116

Upstream sequence

GGAGCCATTGAAGGATTTCAAATTGGGCAGAAATGTCAGATTTGTAGCTCCATCACTCTACTATACTGTGGGTAATAGATTGAAGAAGACAGGAATGGAG

Downstream sequence

ttacaaaatgtctgtggaaatagtggtgaacaagacatggcccttgccttcatgaagtgcacagtctagtAATTATTAATGTAACTAGTGTCATGAAAAT

Target sequence

GTGGGGACACATGTATTTGAGAAATGATAAGGGTAGAGCAGTGAAGACGACAAAGTGGGAATAGTGCTCAGATAGATTTACAGGAAAGAAATCAATAGGACCTGGTATCCATTGAGTAAGGAAAGGGAAGGAGGCAGGATTATTTCTATTTTTCTAGTTTGGGTCAGTTGTGGTAGGAGAATTAGCTTTGGAGGTGGGGAGGGAGAAAGGTGATTCATTTTAATAAAATGtgcta