VISDB Viral Integration Site DataBase

VIS ID

TVIS30015384

Fusion event

HIV-IST1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q22.2

Reference genome

Start

End

71936876/71902800 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-192-3p ; hsa-mir-4712-3p ; hsa-mir-1278 ; hsa-mir-1183 ; hsa-mir-122-5p ; hsa-mir-1236-5p ; hsa-mir-218-5p ; hsa-mir-3659 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-4663 ; hsa-mir-4765 ; hsa-mir-6077 ; hsa-mir-6081 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6165 ; hsa-mir-6873-5p ; hsa-mir-7160-5p ; hsa-mir-8077 ; hsa-mir-873-5p

Nearest miRNA

hsa-mir-1225/Upstream/1872378; hsa-mir-11401/Downstream/4966136;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/6750, chr16-CpG: 50/Downstream/105648

Nearest cancer related gene

IST1(OG, No orient, 0)

Upstream sequence

ataatatcgcctttaaaagtctttagaatctgtagtgatattcaccctttcatcgctgatactgataatttatatgtttatatgttccttttctttgtga

Downstream sequence

ttagattagtaatttgagaccttttttctggagagacagagtcttgctctgttgtccagcctagagtgcagtgggcatgatcatagctcactgcctcctc

Target sequence

gtttgttatataggtatgtcagtttttaaaaaatcgttttgaagaatcagcatttagtttccttgattttttttctattttttcttctatttcattgatttttgctttctttttgttgtttttgcttactttggtttgattttgctctttttctggttccttaatgtggaagc