VISDB Viral Integration Site DataBase

VIS ID

TVIS30015387

Fusion event

HIV-USP10 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q24.1

Reference genome

Start

End

84765156/84731353 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-122-5p ; hsa-mir-98-5p ; hsa-mir-24-3p ; hsa-let-7b-5p ; hsa-mir-455-3p ; hsa-mir-652-3p ; hsa-mir-181b-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p

Nearest miRNA

hsa-mir-1225/Upstream/1222945; hsa-mir-11401/Downstream/476443;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/30856, chr16-CpG: 33/Downstream/88389

Upstream sequence

caggtgtgagccaccgctcccggccTCTACTTTTTTTTTTTTTTTAactgctcgttgcagagcagggctacgccataggcaatgtgcacagagtagcCAC

Downstream sequence

GTTCTTTCTCTTTTGCACTTGAAAAGTAGTTTATAGAATTCTATGAAAAAATACTCTGGCattctaggaacaaaatccttttttctcgaaactttcaaaa

Target sequence

GTTTCTACTATTGATATTAAACAAAACAGCATGATTTTAGTTTATTTATTCTTAATATTTGCATTAAACTTCACAGCTGCCGTGTGTTTCTTGTATTTTACTTCTTTATCATTCTTGTATTTCTCGAATTCATTTTCTGGAATTCTTAAGCAGTTTCCTTTCCTCCCCCCAAGAAAAAGGTGTATGTGACAGAAAGT