Basic Information
VIS ID
TVIS30015389
Fusion event
HIV-chr16 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
87814835/87781229 (Hg38)
End
87814784/87781229 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12128/Upstream/1862813; hsa-mir-11401/Downstream/53363;
Nearest TSS
ENST00000527434/Upstream/1855; ENST00000563687/Downstream/25247;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1765, chr16-CpG: 15/Downstream/79524
Nearby gene
KLHDC4(No orient, 15237)
Upstream sequence
ctaatttttatatttttagtagagacggggtttcaccatgttggtcaggctagtcttgaactcctgacctcaagtgatccacccgcctcagccccccaaa
Downstream sequence
ctgctgagattacaggtgtgagccaccgcgcccagccTCATTTACTTGttttgataatttttttcttttgggataatcgtagctttgcaggacagctaag
Target sequence
ctagtcttgaactcctgacctcaagtgatccacccgcctcagccccccaaa
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate