VISDB Viral Integration Site DataBase

VIS ID

TVIS30015390

Fusion event

HIV-ZC3H18 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q24.2

Reference genome

Start

End

88649916/88583696 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1914-3p ; hsa-mir-29b-2-5p ; hsa-mir-93-3p ; hsa-mir-484 ; hsa-mir-18b-5p ; hsa-mir-106b-5p ; hsa-mir-218-5p ; hsa-mir-183-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-92a-3p ; hsa-mir-31-5p ; hsa-mir-18a-5p ; hsa-mir-17-5p ; hsa-let-7f-5p ; hsa-let-7a-5p

Nearest miRNA

hsa-mir-11401/Upstream/114665; hsa-mir-4722/Downstream/132582;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/12771, chr16-CpG: 26/Downstream/39363

Upstream sequence

AAATTGGAGTAGATGATGCCCTCAGCCTGGTGTCCTTTATCCACGTGTGTATTTCCCCTGTGGTGAGAAAGCACCAGCAGGAGTGTGCCAGCGTGGAGAC

Downstream sequence

CCGGCTTCAGATGGGTGCACTGAGGCCTGTGTGTCTCCTCACACTCACCCTCAGTGTCCACGTCAACTTGGCCTGTCCCAGGTGGTGTGTGTTGAGAGCC

Target sequence

gtccacactcacagtcatgacagcctggacccaggatttgaacctgggcctTTTCCCCCACTGCATGTGAATTTTATAAAGGCTCTTAAAATTGGAGTAGATGATGCCCTCAGCCTGGTGTCCTTTATCCACGTGTGTATTTCCCCTGTGGTGAGAAAGCACCAGCAGGAGTGTGCCAGCGTGGAGAC