Basic Information
VIS ID
TVIS30015392
Fusion event
HIV-chr16 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
88867585/88801177 (Hg38)
End
88867546/88801177 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-11401/Upstream/84840;
Nearest TSS
ENST00000527434/Upstream/15957; ENST00000562747/Downstream/2036;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/15311, chr16-CpG: 113/Downstream/2195
Nearby gene
CDT1(No orient, 2600)
Upstream sequence
ggattacaggtgtgagtcactgcgcccagccTGtccatcttatttgatgcattttaaagtgtcagacatctgttattcctaaacacttctgcatgcatgt
Downstream sequence
cattgactagagttcgatatttgctgataatttggcttttaaataaatttacataccataaaatacacaaatcttaagctaccctcagattttgataaat
Target sequence
tcagacatctgttattcctaaacacttctgcatgcatgt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate