Basic Information
VIS ID
TVIS30015404
Fusion event
HIV-chr17 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
4286094/4382799 (Hg38)
End
4286036/4382799 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1253/Upstream/1634617; hsa-mir-10226/Downstream/586903;
Nearest TSS
ENST00000595228/Upstream/16171; ENST00000572078/Downstream/50889;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/15939, chr17-CpG: 109/Downstream/115865
Nearby gene
UBE2G1(No orient, 16125)
Upstream sequence
TTGCCCATTCTtttgtttttttgttttgttcttttgtttttgttttcgctcttgttacccaggcaggagtgcaatggtgcgatctccggttcactgcaac
Downstream sequence
ctccgccacctgggttcaagcagttctcctgcctcagcctcccgagcagctaggattacaggccaccatacccagctaattttgtatttttagtagagac
Target sequence
ttttcgctcttgttacccaggcaggagtgcaatggtgcgatctccggttcactgcaac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate