Basic Information
VIS ID
TVIS30015412
Fusion event
HIV-chr17 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7177955/7274636 (Hg38)
End
7177906/7274636 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1253/Upstream/51257; hsa-mir-10226/Downstream/813420;
Nearest TSS
ENST00000595228/Upstream/10653; ENST00000571308/Downstream/7031;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/11710, chr17-CpG: 126/Downstream/6069
Nearby gene
SLC2A4(No orient, 7098)
Upstream sequence
actcatctcttttattcttggggaaaaaaacaaagatgtccactgttaccacacttattttacaaaatcctagaggtcttgagcaatactacaaggaaat
Downstream sequence
aaaagaaacaagtagtgcaaagatacgaaaggaaaaaataaaactgattatttgccgggcgcggtagctcacggctgtaatcccagcactttgggaggcc
Target sequence
cacttattttacaaaatcctagaggtcttgagcaatactacaaggaaat
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate