VISDB Viral Integration Site DataBase

VIS ID

TVIS30015421

Fusion event

HIV-MPRIP integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p11.2

Reference genome

Start

End

16969858/17066717 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-31-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-1909-3p ; hsa-mir-1296-5p ; hsa-mir-324-3p ; hsa-mir-542-5p ; hsa-mir-2113 ; hsa-mir-1290 ; hsa-mir-4450 ; hsa-mir-4696 ; hsa-mir-218-5p ; hsa-mir-568 ; hsa-mir-595 ; hsa-mir-636 ; hsa-mir-643 ; hsa-mir-648 ; hsa-mir-1252-5p ; hsa-mir-3185 ; hsa-mir-4271 ; hsa-mir-4533 ; hsa-mir-4725-3p ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-6783-5p ; hsa-mir-6780b-5p ; hsa-mir-3120-3p ; hsa-mir-3942-5p ; hsa-mir-4703-5p ; hsa-mir-183-5p ; hsa-mir-593-5p ; hsa-mir-4786-3p ; hsa-mir-8076 ; hsa-mir-549a ; hsa-mir-3529-3p ; hsa-mir-5010-3p ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6781-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-548m ; hsa-mir-5011-3p ; hsa-mir-6877-5p ; hsa-mir-6845-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-2681-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-4328 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-3160-5p ; hsa-mir-3691-3p ; hsa-mir-6814-5p ; hsa-mir-7977 ; hsa-mir-4530 ; hsa-mir-646 ; hsa-mir-3613-3p ; hsa-mir-122-5p ; hsa-mir-3135b ; hsa-mir-3136-5p ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4439 ; hsa-mir-4462 ; hsa-mir-4513 ; hsa-mir-504-3p ; hsa-mir-5190 ; hsa-mir-5698 ; hsa-mir-6855-3p ; hsa-mir-6857-3p ; hsa-mir-7156-3p

Nearest miRNA

hsa-mir-1253/Upstream/784629; hsa-mir-10226/Downstream/746763;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/23610, chr17-CpG: 20/Downstream/91913

Upstream sequence

aaaccacggatagtactgaacctgattgctttcagttggaactcatttttgattggaaacaacctagatatcccctcatgtcaaacccacagatactttt

Downstream sequence

ttcatcttttttttttttttttttttttttttttttttttttttttttttttgagacagtgtcttgccctgccctgttgcccaggccggagtgtagtggt

Target sequence

gttgatttttgcatctatagcagtccccctttatttgcaagagatacattccaacagccccagtggattcctcaaaccacggatagtactgaacctgattgctttcagttggaactcatttttgattggaaacaacctagatatcccctcatgtcaaacccacagatactttt