VISDB Viral Integration Site DataBase

VIS ID

TVIS30015424

Fusion event

HIV-ULK2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p11.2

Reference genome

Start

End

19767641/19864021 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-2681-5p ; hsa-mir-6807-5p ; hsa-mir-4713-5p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-6814-5p ; hsa-mir-3691-3p ; hsa-mir-1264 ; hsa-mir-302c-5p ; hsa-mir-3143 ; hsa-mir-6514-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-564 ; hsa-mir-1290 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-383-3p ; hsa-mir-3614-5p ; hsa-mir-541-5p ; hsa-mir-6842-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3127-5p ; hsa-mir-593-3p ; hsa-mir-323a-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-4766-5p ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-6823-5p ; hsa-mir-33b-5p ; hsa-mir-26b-5p ; hsa-mir-1273h-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3612 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-455-3p ; hsa-mir-490-3p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-7851-3p ; hsa-mir-149-3p ; hsa-mir-34b-3p ; hsa-mir-4728-5p ; hsa-mir-6500-3p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p

Nearest miRNA

hsa-mir-1180/Upstream/519447; hsa-mir-10226/Downstream/7429889;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/118842, chr17-CpG: 128/Downstream/2972

Upstream sequence

TAACTGGGTGATGAACATGCATAGTGACCTTGtttttaatttattttctaatattttttcaatttacaaatattGCTTTCATAAGAAGAAAAAGCACTAT

Downstream sequence

gctgggcatggtggtgcacacctatagtcctagctactcgggaggctgaggcaggagaatcgcttaaacccgggaggtagcagttgcagtgagccgagat

Target sequence

GTAggccatgtgtggtggctcacatctgtaatcccagcactttgagaggctgaggcagaaggatcccttgagcccaggagttcaagactagcctgagcaacacagagggaccctatctctacaaaataaaaaaaaTGTTTTTTTAAAAAAAGAACTTCTATTTAggcggggcgcagtggctcacgcctgtaatcccagtactttgggaggccaaggtgggaggatgacttgaggtcaggagttcgagacaagcct