VISDB Viral Integration Site DataBase

VIS ID

TVIS30015429

Fusion event

HIV-FLOT2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

27222437/28895254 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-423-3p ; hsa-mir-4433a-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-4303 ; hsa-mir-4320 ; hsa-mir-6081 ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-4445-5p ; hsa-mir-6766-3p ; hsa-mir-4782-3p ; hsa-mir-219a-5p ; hsa-mir-508-3p ; hsa-mir-4765 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-4693-3p ; hsa-mir-7162-3p ; hsa-mir-4649-3p ; hsa-mir-3918 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-8062 ; hsa-mir-6895-5p ; hsa-mir-6510-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-5586-3p ; hsa-mir-449a ; hsa-mir-34a-5p

Nearest miRNA

hsa-mir-1180/Upstream/33524; hsa-mir-10226/Downstream/495408;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/39953, chr17-CpG: 67/Downstream/1733

Upstream sequence

catctgcctcagcctctcaaattgctggaattacaggcattagtctggccaagaatacttataaattcataaaataaatacataagaaattatattgaaa

Downstream sequence

cccggctaattttttgtatttttaacagaaacgggatttcaccatgttagccagaacggtctccaactcctgacctcagttgatcctcccatctcggcct

Target sequence

gttatcaaaatttaaaaccaagtgtgcaatattagtaatatgtcattctttattaatacattaaatagtaagatctagtggtaaatctaattattagcttaatgccaaaatacagatgaATTATTTCCTTTTTTTTTGAGATGCTtacaagcgtgcatcactatg