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TVIS30015436
Basic Information
VIS ID
TVIS30015436
Fusion event
HIV-TAOK1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
27877740/29550722 (Hg38)
End
27877689/29550722 (Hg38)
Orient
-
Location type
Exonic
Target gene
TAOK1
miRNAs that regulate target gene
hsa-mir-425-5p
;
hsa-mir-142-3p
;
hsa-mir-30b-5p
;
hsa-mir-96-5p
;
hsa-mir-190a-3p
;
hsa-mir-297
;
hsa-mir-466
;
hsa-mir-3941
;
hsa-mir-4643
;
hsa-mir-4789-3p
;
hsa-mir-5011-5p
;
hsa-mir-6867-5p
;
hsa-mir-8485
;
hsa-mir-124-5p
;
hsa-mir-490-5p
;
hsa-mir-1206
;
hsa-mir-1246
;
hsa-mir-27a-3p
;
hsa-mir-27b-3p
;
hsa-mir-144-5p
;
hsa-mir-144-3p
;
hsa-mir-1255a
;
hsa-mir-1255b-5p
;
hsa-mir-15a-5p
;
hsa-mir-16-5p
;
hsa-mir-15b-5p
;
hsa-mir-195-5p
;
hsa-mir-424-5p
;
hsa-mir-497-5p
;
hsa-mir-503-5p
;
hsa-mir-646
;
hsa-mir-6838-5p
;
hsa-mir-3908
;
hsa-mir-541-5p
;
hsa-mir-374b-3p
;
hsa-mir-4524a-5p
;
hsa-mir-4524b-5p
;
hsa-mir-4533
;
hsa-mir-3177-5p
;
hsa-mir-7856-5p
;
hsa-mir-18a-5p
;
hsa-mir-24-3p
;
hsa-mir-18b-5p
;
hsa-mir-3190-3p
;
hsa-mir-3202
;
hsa-mir-3677-5p
;
hsa-mir-4735-3p
;
hsa-mir-4795-5p
;
hsa-mir-5585-3p
;
hsa-mir-130a-3p
;
hsa-mir-301a-3p
;
hsa-mir-130b-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-454-3p
;
hsa-mir-301b-3p
;
hsa-mir-1229-5p
;
hsa-mir-4295
;
hsa-mir-3658
;
hsa-mir-3666
;
hsa-mir-4476
;
hsa-mir-6756-5p
;
hsa-mir-6766-5p
;
hsa-mir-6769a-5p
;
hsa-mir-6769b-5p
;
hsa-mir-6876-5p
;
hsa-mir-8065
;
hsa-mir-2392
;
hsa-mir-4320
;
hsa-mir-3653-3p
;
hsa-mir-2355-5p
;
hsa-mir-625-5p
;
hsa-mir-4284
;
hsa-mir-6504-3p
;
hsa-mir-125a-3p
;
hsa-mir-764
;
hsa-mir-3934-5p
;
hsa-mir-1262
;
hsa-mir-4701-3p
;
hsa-mir-6736-5p
;
hsa-mir-27b-5p
;
hsa-mir-3133
;
hsa-mir-4511
;
hsa-mir-511-3p
;
hsa-mir-548at-5p
;
hsa-mir-4477b
;
hsa-mir-4684-5p
;
hsa-mir-3165
;
hsa-mir-6880-5p
;
hsa-mir-8071
;
hsa-mir-138-1-3p
;
hsa-mir-1244
;
hsa-mir-5692c
;
hsa-mir-5692b
;
hsa-mir-1265
;
hsa-mir-128-3p
;
hsa-mir-3681-3p
;
hsa-mir-216a-3p
;
hsa-mir-7641
;
hsa-mir-4662a-5p
;
hsa-mir-876-5p
;
hsa-mir-3167
;
hsa-mir-6768-3p
;
hsa-mir-6741-5p
;
hsa-mir-4483
;
hsa-mir-1293
;
hsa-mir-6745
;
hsa-mir-363-5p
;
hsa-mir-3132
;
hsa-mir-197-5p
;
hsa-mir-9-5p
;
hsa-mir-3679-3p
;
hsa-mir-3145-3p
;
hsa-mir-4286
;
hsa-mir-181a-2-3p
;
hsa-mir-892c-5p
;
hsa-mir-580-5p
;
hsa-mir-561-3p
;
hsa-mir-5089-5p
;
hsa-mir-6807-5p
;
hsa-mir-7151-3p
;
hsa-mir-5095
;
hsa-mir-5589-5p
;
hsa-mir-4731-5p
;
hsa-mir-6506-5p
;
hsa-mir-619-5p
;
hsa-mir-6884-3p
;
hsa-mir-512-3p
;
hsa-mir-552-3p
;
hsa-mir-372-3p
;
hsa-mir-373-3p
;
hsa-mir-520b
;
hsa-mir-520c-3p
;
hsa-mir-520d-3p
;
hsa-mir-302d-3p
;
hsa-mir-520e
;
hsa-mir-302c-3p
;
hsa-mir-302b-3p
;
hsa-mir-302e
;
hsa-mir-302a-3p
;
hsa-mir-520a-3p
;
hsa-mir-1290
;
hsa-mir-223-5p
;
hsa-mir-567
;
hsa-mir-603
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-525-5p
;
hsa-mir-520a-5p
;
hsa-mir-549a
;
hsa-mir-676-5p
;
hsa-mir-4661-3p
;
hsa-mir-1303
;
hsa-mir-5096
;
hsa-mir-197-3p
;
hsa-mir-411-5p
;
hsa-mir-6832-5p
;
hsa-mir-193b-5p
;
hsa-mir-483-5p
;
hsa-mir-6894-3p
;
hsa-mir-5001-3p
;
hsa-mir-378a-5p
;
hsa-mir-4763-5p
;
hsa-mir-6778-3p
;
hsa-mir-6821-3p
;
hsa-mir-6790-3p
;
hsa-mir-3653-5p
;
hsa-mir-6747-3p
;
hsa-mir-4777-5p
;
hsa-mir-523-5p
;
hsa-mir-526a
;
hsa-mir-522-5p
;
hsa-mir-520c-5p
;
hsa-mir-519c-5p
;
hsa-mir-519b-5p
;
hsa-mir-519a-5p
;
hsa-mir-518f-5p
;
hsa-mir-518e-5p
;
hsa-mir-518d-5p
;
hsa-mir-6837-3p
;
hsa-mir-4305
;
hsa-mir-6787-3p
;
hsa-mir-578
;
hsa-mir-4753-3p
;
hsa-mir-6892-5p
;
hsa-mir-4793-5p
;
hsa-mir-5196-3p
;
hsa-mir-501-5p
;
hsa-mir-6856-3p
;
hsa-mir-4475
;
hsa-mir-640
;
hsa-mir-6853-3p
;
hsa-mir-1277-5p
;
hsa-mir-4665-5p
;
hsa-mir-1275
;
hsa-mir-588
;
hsa-mir-4701-5p
;
hsa-mir-5010-5p
;
hsa-mir-4525
;
hsa-mir-7111-5p
;
hsa-mir-6870-5p
;
hsa-mir-5698
;
hsa-mir-4723-5p
;
hsa-mir-3175
;
hsa-mir-8085
;
hsa-mir-6731-5p
;
hsa-mir-4644
;
hsa-mir-4306
;
hsa-mir-185-5p
;
hsa-mir-7106-3p
;
hsa-mir-4252
;
hsa-mir-2467-5p
;
hsa-mir-637
;
hsa-mir-3162-3p
;
hsa-mir-6856-5p
;
hsa-mir-6758-5p
;
hsa-mir-942-3p
;
hsa-mir-30e-5p
;
hsa-mir-30d-5p
;
hsa-mir-30c-5p
;
hsa-mir-30a-5p
;
hsa-mir-1289
;
hsa-mir-129-5p
;
hsa-mir-3672
;
hsa-mir-6864-3p
;
hsa-mir-8055
Nearest miRNA
hsa-mir-1180/Upstream/159992; hsa-mir-10226/Downstream/566357;
Nearest TSS
ENST00000595228/Upstream/28434;
ENST00000584522/Downstream/9825;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/159703
,
chr17-CpG: 283/Downstream/15346
Upstream sequence
TATTAACACAGTTTTAACATAAGTTATCCCACTGGGTTTAAGAGCATCTTGAATGTATAATCCTTTTTGTAACCCAGGTTGGTTTCTACTTTTACCAGTC
Downstream sequence
ACCCAAACATATTTATGTTTTTAGTTTTATGTACTCATTTCCCTTTGTTTTCCTCAAACAGCATGATTTTTTTGCACATGTAGAAATTTTTTAAAAGAAA
Target sequence
TGAATGTATAATCCTTTTTGTAACCCAGGTTGGTTTCTACTTTTACCAGTC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Sample Information
×
Sample name
PT1
Sample type
PBMC
Age
47
Gender
Male
CpG Island Information
×
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