Basic Information
VIS ID
TVIS30015449
Fusion event
HIV-NF1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
End
29593569/31266617 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1180/Upstream/172192; hsa-mir-10226/Downstream/268266;
Nearby gene
OMG(No orient, 28032)
Nearest cancer related gene
NF1(TSG, No orient, 0)
Upstream sequence
TAAATTGCCTAAGATCATTTTAATTTTCGTTTGCGTTTGAGATGAACCATATTTGTATTCTAACCCCAACCTTTAATACAACCAGGATATTTTTACTTTT
Downstream sequence
CCGTTGTTGTCTAAGTAAAAAGCAAACATTGGTAAGGGAGGTAGAAGATGTGTTTCCCCCTCTTCTTTAAAATCTTATTAGTTTACAAATAGCAAAGATT
Target sequence
GTTTGAGATGAACCATATTTGTATTCTAACCCCAACCTTTAATACAACCAGGATATTTTTACTTTT
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate