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TVIS30015465
Basic Information
VIS ID
TVIS30015465
Fusion event
HIV-WIPF2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
38389928/40233676 (Hg38)
End
38389786/40233676 (Hg38)
Orient
-
Location type
Intronic
Target gene
WIPF2
miRNAs that regulate target gene
hsa-mir-92a-3p
;
hsa-mir-1245a
;
hsa-mir-8079
;
hsa-mir-3591-5p
;
hsa-mir-7854-3p
;
hsa-mir-5197-3p
;
hsa-mir-218-5p
;
hsa-mir-4276
;
hsa-mir-6077
;
hsa-mir-5190
;
hsa-mir-3919
;
hsa-mir-4688
;
hsa-mir-6743-5p
;
hsa-mir-6859-5p
;
hsa-mir-3916
;
hsa-mir-3125
;
hsa-mir-3184-5p
;
hsa-mir-423-5p
;
hsa-mir-4766-5p
;
hsa-mir-6858-5p
;
hsa-mir-4689
;
hsa-mir-4473
;
hsa-mir-4671-3p
;
hsa-mir-4710
;
hsa-mir-520f-3p
;
hsa-mir-302c-3p
;
hsa-mir-512-3p
;
hsa-mir-2278
;
hsa-mir-1276
;
hsa-mir-361-5p
;
hsa-mir-3619-3p
;
hsa-mir-2115-3p
;
hsa-mir-3163
;
hsa-mir-6816-3p
;
hsa-mir-8080
;
hsa-mir-449c-3p
;
hsa-mir-8086
;
hsa-mir-3121-5p
;
hsa-mir-454-3p
;
hsa-mir-3666
;
hsa-mir-4295
;
hsa-mir-301b-3p
;
hsa-mir-301a-3p
;
hsa-mir-130b-3p
;
hsa-mir-130a-3p
;
hsa-mir-8062
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-6796-3p
;
hsa-mir-99b-3p
;
hsa-mir-99a-3p
;
hsa-mir-7109-3p
;
hsa-mir-106b-5p
;
hsa-mir-106a-5p
;
hsa-mir-93-5p
;
hsa-mir-526b-3p
;
hsa-mir-20b-5p
;
hsa-mir-17-5p
;
hsa-mir-20a-5p
;
hsa-mir-519d-3p
;
hsa-mir-129-5p
;
hsa-mir-450a-5p
;
hsa-mir-6821-5p
;
hsa-mir-1273g-5p
;
hsa-mir-203a-5p
;
hsa-mir-599
;
hsa-mir-3161
;
hsa-mir-4668-5p
;
hsa-mir-766-5p
;
hsa-mir-580-3p
;
hsa-mir-7977
;
hsa-mir-7160-5p
;
hsa-mir-6134
;
hsa-mir-6770-5p
;
hsa-mir-1253
;
hsa-mir-7162-3p
;
hsa-mir-383-3p
;
hsa-mir-372-5p
;
hsa-mir-371a-5p
;
hsa-mir-616-5p
;
hsa-mir-373-5p
;
hsa-mir-371b-5p
;
hsa-mir-5699-3p
;
hsa-mir-4421
;
hsa-mir-6748-3p
;
hsa-mir-4793-5p
;
hsa-mir-3613-3p
;
hsa-mir-5692a
;
hsa-mir-5047
;
hsa-mir-1301-3p
;
hsa-mir-7156-3p
;
hsa-mir-5581-3p
;
hsa-mir-4448
;
hsa-mir-4758-3p
;
hsa-mir-3667-3p
;
hsa-mir-6734-3p
;
hsa-mir-4267
;
hsa-mir-6736-3p
;
hsa-mir-4323
;
hsa-mir-6858-3p
;
hsa-mir-143-5p
;
hsa-mir-1976
;
hsa-mir-3653-5p
;
hsa-mir-3690
;
hsa-mir-378j
;
hsa-mir-4254
;
hsa-mir-4279
;
hsa-mir-4320
;
hsa-mir-4722-3p
;
hsa-mir-498
;
hsa-mir-6499-3p
;
hsa-mir-6727-3p
;
hsa-mir-6747-3p
;
hsa-mir-6778-3p
;
hsa-mir-6839-5p
;
hsa-mir-5693
Nearest miRNA
hsa-mir-1180/Upstream/40013; hsa-mir-10226/Downstream/1283488;
Nearest TSS
ENST00000595228/Upstream/13824;
ENST00000578304/Downstream/22712;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/14092
,
chr17-CpG: 31/Downstream/53887
Upstream sequence
gtggggagtacaggtgtgcaccgctgcacctggctatacagttctttcttgagttttccattcttacatattatctgttgaggctgaaggtgatggcaca
Downstream sequence
agcctgtaatcccagcactttaggaggccgaggcctgagattgggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaa
Target sequence
gatggcattgaactcttgggctcaagcagtcctcctgccttagtggggagtacaggtgtgcaccgctgcacctggctatacagttctttcttgagttttccattcttacatattatctgttgaggctgaaggtgatggcaca
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Sample Information
×
Sample name
PT1
Sample type
PBMC
Age
47
Gender
Male
CpG Island Information
×
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