VISDB Viral Integration Site DataBase

VIS ID

TVIS30015470

Fusion event

HIV-SMARCE1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.2

Reference genome

Start

End

38793099/40636646 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-103a-3p ; hsa-mir-26b-5p ; hsa-mir-328-3p ; hsa-mir-30c-5p ; hsa-mir-1260b ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-7162-5p ; hsa-mir-3158-5p ; hsa-mir-3183 ; hsa-mir-4723-3p ; hsa-mir-6769b-3p ; hsa-mir-7110-3p ; hsa-mir-7111-3p ; hsa-mir-544a ; hsa-mir-4684-5p ; hsa-mir-376a-5p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-520f-5p ; hsa-mir-5571-5p ; hsa-mir-107 ; hsa-mir-8065 ; hsa-mir-376a-2-5p ; hsa-mir-1256 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-605-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-3910 ; hsa-mir-196a-3p ; hsa-mir-3182 ; hsa-mir-4774-5p ; hsa-mir-4490 ; hsa-mir-6870-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p

Nearest miRNA

hsa-mir-1180/Upstream/442983; hsa-mir-10226/Downstream/880518;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/192592, chr17-CpG: 69/Downstream/11046

Upstream sequence

AATGTTAATACTGATGTCTAAACGTATAGACCTTTAAAAATAGtttttaatgtggaaacttttcaacatacaaagcagagaaaacagtatcaaatttcta

Downstream sequence

TTCATGTGAATTTAGAAGAAAAGTGCTTAATTTGCATAACACGGTACATCATATTATCAAATACAAATATAATAGTCAAGATCAAAAGGTTTAACATTTC

Target sequence

ggtactcatcagcctacttcaaaaattatcaagaactggccaatctcaagttatctttgccctactggattactttaagatagatctcagacatcacgtcactcacttataaatacttcaatttgATAAGCAAGAATATCTCCAATCACTACAGACACTTAGGATGAGTTACTTCAATAACATAGTCTACGTCTCTAAAAG