VISDB Viral Integration Site DataBase

VIS ID

TVIS30015485

Fusion event

HIV-STAT5B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.2

Reference genome

Start

End

40404276/42252529 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-23b-3p ; hsa-mir-1229-3p ; hsa-mir-93-3p ; hsa-mir-324-3p ; hsa-mir-134-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-335-3p ; hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-6834-5p ; hsa-mir-526b-5p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-4762-5p ; hsa-mir-4789-3p ; hsa-mir-8485 ; hsa-mir-106b-3p ; hsa-mir-150-5p ; hsa-mir-28-5p ; hsa-mir-182-3p ; hsa-mir-28-3p

Nearest miRNA

hsa-mir-1180/Upstream/735312; hsa-mir-10226/Downstream/242244;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/67938, chr17-CpG: 126/Downstream/23404

Upstream sequence

ccatcctggagcaaggaccatgtctctctgattcattttgatttccccaatatagtacttgatatacatggttggtatttagtaattgtgtattgaatAC

Downstream sequence

AATTTTTATAGACCTCCATGTTACAAAAAGGACCTAAATTGGGGGAAATGGATGGTAGGTCAGTTATTTCCTTCAGGATATTTTTAACACTGTGGAGGTC

Target sequence

GGTAGAAATAGAATCAGTACAATATTTGTATCCAATGTCTTTGATCATTTTGATAATCTTATTTTTAAAAGATGGGATGTTTTCCTCCTCTAGAATTAGAATTTACCCTACACTCTGGACATAAGAACCAAGGCAACTAAGttatctgctggccaactaatagactgtaagccatcctggagcaaggaccatgtctctctgattcattttgatttccccaatatagtacttgatatacatggttggtatttagta