Basic Information
VIS ID
TVIS30015489
Fusion event
HIV-STAT5B integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
End
40414092/42262111 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1180/Upstream/744894; hsa-mir-10226/Downstream/232662;
Upstream sequence
TTACTTAATTAAATTTTACATGAAATAAGTAAGTCTACTGGGCTCAAAATTGTCTATTTTTAAGGTTGTAATTTTATTTAAATTCTCTTAAAGTATCAAC
Downstream sequence
TCATAATTTACTTTCATTCCTCTTCTTTAAACTCTGTCAAGTGTTAAAAttcttttatttttattctgagacagggtctttctctgtcacccaggctaga
Target sequence
GGTTGTAATTTTATTTAAATTCTCTTAAAGTATCAAC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate